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# Copyright (c) 2001, 2002, 2003 by Intevation GmbH |
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# Authors: |
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# Bernhard Herzog <[email protected]> |
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# Jan-Oliver Wagner <[email protected]> |
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# Frank Koormann <[email protected]> |
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# |
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# This program is free software under the GPL (>=v2) |
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# Read the file COPYING coming with Thuban for details. |
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""" |
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Classes for handling tables of data. |
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""" |
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__version__ = "$Revision$" |
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import os |
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import inspect |
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import warnings |
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from base import TitledObject |
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import dbflib |
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# the field types supported by a Table instance. |
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FIELDTYPE_INT = "int" |
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FIELDTYPE_STRING = "string" |
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FIELDTYPE_DOUBLE = "double" |
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# map the dbflib constants for the field types to our constants |
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dbflib_fieldtypes = {dbflib.FTString: FIELDTYPE_STRING, |
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dbflib.FTInteger: FIELDTYPE_INT, |
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dbflib.FTDouble: FIELDTYPE_DOUBLE} |
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class OldTableInterfaceMixin: |
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"""Mixin to implement the old table interface using the new one""" |
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|
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def __deprecation_warning(self): |
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"""Issue a DeprecationWarning for code hat uses the old interface""" |
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callername = inspect.currentframe().f_back.f_code.co_name |
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warnings.warn("The %s method of the old table interface" |
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" is deprecated" % callername, |
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DeprecationWarning, stacklevel = 3) |
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def record_count(self): |
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self.__deprecation_warning() |
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return self.NumRows() |
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|
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def field_count(self): |
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self.__deprecation_warning() |
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return self.NumColumns() |
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|
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def field_info(self, field): |
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"""Return a tuple (type, name, width, prec) for the field no. field |
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type is the data type of the field, name the name, width the |
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field width in characters and prec the decimal precision. width |
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and prec will be zero if the information returned by the Column |
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method doesn't provide values for them. |
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""" |
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self.__deprecation_warning() |
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col = self.Column(field) |
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return (col.type, col.name, |
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getattr(col, "width", 0), getattr(col, "prec", 0)) |
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def field_info_by_name(self, col): |
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self.__deprecation_warning() |
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try: |
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return self.field_info(col) |
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except KeyError: |
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# FIXME: It may be that field_info raises other exceptions |
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# when the name is not a valid column name. |
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return None |
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|
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def field_range(self, fieldName): |
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self.__deprecation_warning() |
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min, max = self.ValueRange(fieldName) |
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return ((min, None), (max, None)) |
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def GetUniqueValues(self, field): |
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self.__deprecation_warning() |
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return self.UniqueValues(field) |
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def read_record(self, r): |
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self.__deprecation_warning() |
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return self.ReadRowAsDict(r) |
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class DBFColumn: |
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"""Description of a column in a DBFTable |
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Instances have the following public attributes: |
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name -- Name of the column |
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type -- Type of the column (one of FIELDTYPE_STRING, FIELDTYPE_INT or\ |
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FIELDTYPE_DOUBLE) |
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index -- The index of the column |
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width -- the width of the data in the column |
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prec -- The precision of the data (only valid for type == FIELDTYPE_DOUBLE) |
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""" |
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def __init__(self, name, type, width, prec, index): |
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self.name = name |
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self.type = type |
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self.width = width |
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self.prec = prec |
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self.index = index |
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class DBFTable(TitledObject, OldTableInterfaceMixin): |
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""" |
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Table interface for the data in a DBF file |
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""" |
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# Implementation strategy regarding writing to a DBF file: |
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# |
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# Most of the time Thuban only needs to read from a table and it is |
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# important that Thuban can work with read-only files. Therefore the |
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# DBF file is opened only for reading initially. Only when |
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# write_record is called we try to open the DBF file for writing as |
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# well. If that succeeds the read/write DBF file will be used for |
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# all IO afterwards. |
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# |
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# It's important to use the same DBF file object for both reading |
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# and writing to make sure that reading a records after writing |
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# returns the new values. With two separate objects this wouldn't |
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# work because a DBF file object buffers some data |
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def __init__(self, filename): |
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self.filename = os.path.abspath(filename) |
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# Omit the extension in the title as it's not really needed and |
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# it can be confusing because dbflib removes extensions and |
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# appends some variations of '.dbf' before it tries to open the |
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# file. So the title could be e.g. myshapefile.shp when the real |
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# filename is myshapefile.dbf |
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title = os.path.splitext(os.path.basename(self.filename))[0] |
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TitledObject.__init__(self, title) |
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self.dbf = dbflib.DBFFile(filename) |
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# If true, self.dbf is open for writing. |
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self._writable = 0 |
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# Create the column information objects |
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self.columns = [] |
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self.column_map = {} |
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for i in range(self.NumColumns()): |
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ftype, name, width, prec = self.dbf.field_info(i) |
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ftype = dbflib_fieldtypes[ftype] |
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index = len(self.columns) |
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col = DBFColumn(name, ftype, width, prec, index) |
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self.columns.append(col) |
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self.column_map[name] = col |
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self.column_map[index] = col |
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def NumRows(self): |
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"""Return the number of rows in the table""" |
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return self.dbf.record_count() |
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def NumColumns(self): |
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"""Return the number of columns in the table""" |
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return self.dbf.field_count() |
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def Columns(self): |
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"""Return the table's colum definitions |
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The return value is a sequence of DBFColumn instances, one for |
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each column. |
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""" |
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return self.columns |
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def Column(self, col): |
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"""Return information about the column given by its name or index |
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The returned object is an instance of DBFColumn |
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""" |
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return self.column_map[col] |
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def HasColumn(self, col): |
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"""Return whether the table has a column with the given name or index |
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""" |
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return self.column_map.has_key(col) |
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def RowIdToOrdinal(self, gid): |
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"""Return the row ordinal given its id |
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Since for DBFTables the row id is the row number, return the |
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value unchanged. |
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""" |
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return gid |
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def RowOrdinalToId(self, num): |
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"""Return the rowid for given its ordinal |
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Since for DBFTables the row id is the row number, return the |
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value unchanged. |
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""" |
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return num |
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def ReadRowAsDict(self, row, row_is_ordinal = 0): |
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"""Return the entire row as a dictionary with column names as keys |
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The row_is_ordinal is ignored for DBF tables because the row id |
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is always the row number. |
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""" |
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return self.dbf.read_record(row) |
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def ReadValue(self, row, col, row_is_ordinal = 0): |
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"""Return the value of the specified row and column |
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The col parameter may be the index of the column or its name. |
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The row_is_ordinal is ignored for DBF tables because the row id |
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is always the row number. |
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""" |
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return self.dbf.read_attribute(row, self.column_map[col].index) |
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|
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def ValueRange(self, col): |
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"""Return the minimum and maximum values of the values in the column |
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The return value is a tuple (min, max) unless the table is empty |
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in which case the return value is None. |
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""" |
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count = self.NumRows() |
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if count == 0: |
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return None |
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min = max = self.ReadValue(0, col) |
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for i in range(1, count): |
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value = self.ReadValue(i, col) |
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if value < min: |
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min = value |
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elif value > max: |
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max = value |
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return (min, max) |
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|
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def UniqueValues(self, col): |
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"""Return a sorted list of all unique values in the column col""" |
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dict = {} |
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for i in range(self.NumRows()): |
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value = self.ReadValue(i, col) |
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dict[value] = 0 |
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values = dict.keys() |
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values.sort() |
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return values |
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def Dependencies(self): |
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"""Return an empty sequence. The DBFTable doesn't depend on anything""" |
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return () |
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# DBF specific interface parts. |
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def Width(self, col): |
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"""Return column width""" |
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return self.column_map[col].width |
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def Destroy(self): |
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self.dbf.close() |
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self.dbf = None |
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def write_record(self, record, values): |
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"""Write the values into the record |
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The values parameter may either be a dictionary or a sequence. |
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If it's a dictionary the keys must be the names of the fields |
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and their value must have a suitable type. Only the fields |
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actually contained in the dictionary are written. Fields for |
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which there's no item in the dict are not modified. |
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If it's a sequence, all fields must be present in the right |
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order. |
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""" |
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if not self._writable: |
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new_dbf = dbflib.DBFFile(self.filename, "r+b") |
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self.dbf.close() |
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self.dbf = new_dbf |
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self._writable = 1 |
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self.dbf.write_record(record, values) |
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self.dbf.commit() |
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def FileName(self): |
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"""Return the filename the DBFTable was instantiated with""" |
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return self.filename |
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class MemoryColumn: |
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def __init__(self, name, type, index): |
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self.name = name |
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self.type = type |
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self.index = index |
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class MemoryTable(TitledObject, OldTableInterfaceMixin): |
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"""Very simple table implementation that operates on a list of tuples""" |
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def __init__(self, fields, data): |
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"""Initialize the MemoryTable |
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Parameters: |
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fields -- List of (name, field_type) pairs |
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data -- List of tuples, one for each row of data |
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""" |
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self.data = data |
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title = 'MemoryTable' |
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TitledObject.__init__(self, title) |
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# Create the column information objects |
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self.columns = [] |
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self.column_map = {} |
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for name, ftype in fields: |
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index = len(self.columns) |
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col = MemoryColumn(name, ftype, index) |
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self.columns.append(col) |
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self.column_map[name] = col |
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self.column_map[index] = col |
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def NumColumns(self): |
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"""Return the number of columns in the table""" |
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return len(self.columns) |
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def Column(self, col): |
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"""Return information about the column given by its name or index |
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The returned object is an instance of MemoryColumn. |
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""" |
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return self.column_map[col] |
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def Columns(self): |
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"""Return the table's colum definitions |
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The return value is a sequence of MemoryColumn instances, one |
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for each column. |
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""" |
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return self.columns |
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|
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def HasColumn(self, col): |
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"""Return whether the table has a column with the given name or index |
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""" |
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return self.column_map.has_key(col) |
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|
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def NumRows(self): |
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"""Return the number of rows in the table""" |
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return len(self.data) |
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|
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def RowIdToOrdinal(self, gid): |
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"""Return the row ordinal given its id |
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Since for MemoryTables the row id is the row number, return the |
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value unchanged. |
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""" |
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return gid |
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def RowOrdinalToId(self, num): |
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"""Return the rowid for given its ordinal |
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Since for MemoryTables the row id is the row number, return the |
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value unchanged. |
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""" |
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return num |
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def ReadValue(self, row, col, row_is_ordinal = 0): |
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"""Return the value of the specified row and column |
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The col parameter may be the index of the column or its name. |
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bh |
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The row_is_ordinal is ignored for DBF tables because the row id |
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is always the row number. |
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""" |
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return self.data[row][self.column_map[col].index] |
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def ReadRowAsDict(self, index, row_is_ordinal = 0): |
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"""Return the entire row as a dictionary with column names as keys |
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The row_is_ordinal is ignored for DBF tables because the row id |
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is always the row number. |
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""" |
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return dict([(col.name, self.data[index][col.index]) |
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for col in self.columns]) |
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def ValueRange(self, col): |
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"""Return the minimum and maximum values of the values in the column |
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The return value is a tuple (min, max) unless the table is empty |
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in which case the return value is None. |
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|
""" |
398 |
|
|
|
399 |
|
|
index = self.column_map[col].index |
400 |
|
|
values = [row[index] for row in self.data] |
401 |
|
|
if not values: |
402 |
|
|
return None |
403 |
|
|
|
404 |
|
|
return min(values), max(values) |
405 |
|
|
|
406 |
|
|
def UniqueValues(self, col): |
407 |
frank |
1025 |
"""Return a sorted list of all unique values in the column col |
408 |
|
|
|
409 |
|
|
col can be either column index or name. |
410 |
|
|
""" |
411 |
bh |
818 |
dict = {} |
412 |
|
|
|
413 |
|
|
for i in range(self.NumRows()): |
414 |
|
|
value = self.ReadValue(i, col) |
415 |
|
|
dict[value] = 0 |
416 |
|
|
|
417 |
|
|
values = dict.keys() |
418 |
|
|
values.sort() |
419 |
|
|
return values |
420 |
|
|
|
421 |
frank |
1025 |
def Width(self, col): |
422 |
|
|
"""Return the maximum width of values in the column |
423 |
|
|
|
424 |
bh |
1043 |
The return value is the the maximum length of string |
425 |
|
|
representation of the values in the column (represented by index |
426 |
|
|
or name). |
427 |
|
|
""" |
428 |
frank |
1025 |
max = 0 |
429 |
bh |
1043 |
|
430 |
frank |
1025 |
type = self.column_map[col].type |
431 |
|
|
index = self.column_map[col].index |
432 |
|
|
values = [row[index] for row in self.data] |
433 |
|
|
if not values: |
434 |
|
|
return None |
435 |
|
|
|
436 |
|
|
if type == FIELDTYPE_DOUBLE: |
437 |
bh |
1043 |
format = "%.12f" |
438 |
frank |
1025 |
elif type == FIELDTYPE_INT: |
439 |
|
|
format = "%d" |
440 |
|
|
else: |
441 |
|
|
format = "%s" |
442 |
|
|
for value in values: |
443 |
|
|
l = len(format % value) |
444 |
|
|
if l > max: |
445 |
|
|
max = l |
446 |
|
|
|
447 |
|
|
return max |
448 |
|
|
|
449 |
bh |
984 |
def Dependencies(self): |
450 |
|
|
"""Return an empty sequence. The MemoryTable doesn't depend on anything |
451 |
|
|
""" |
452 |
|
|
return () |
453 |
bh |
818 |
|
454 |
|
|
def write_record(self, record, values): |
455 |
|
|
# TODO: Check for correct lenght and perhaps also |
456 |
|
|
# for correct types in case values is a tuple. How to report problems? |
457 |
|
|
# TODO: Allow values to be a dictionary and write the single |
458 |
|
|
# fields that are specified. |
459 |
|
|
self.data[record] = values |
460 |
frank |
1025 |
|
461 |
|
|
|
462 |
bh |
1371 |
|
463 |
|
|
def _find_dbf_column_names(names): |
464 |
|
|
"""Determine the column names to use in a DBF file |
465 |
|
|
|
466 |
|
|
DBF files have a length limit of 10 characters on the column names |
467 |
|
|
so when writing an arbitrary Thuban table to a DBF file we may have |
468 |
|
|
we may have to rename some of the columns making sure that they're |
469 |
|
|
unique in the DBF file too. |
470 |
|
|
|
471 |
|
|
Names that are already short enough will stay the same. Longer names |
472 |
|
|
will be truncated to 10 characters or if that isn't unique it will |
473 |
|
|
be truncated more and filled up with digits. |
474 |
|
|
|
475 |
|
|
The parameter names should be a list of the column names. The return |
476 |
|
|
value will be a dictionary mapping the names in the input list to |
477 |
|
|
the names to use in the DBF file. |
478 |
|
|
""" |
479 |
|
|
# mapping from the original names in table to the names in the DBF |
480 |
|
|
# file |
481 |
|
|
name_map = {} |
482 |
|
|
|
483 |
|
|
# First, we keep all names that are already short enough |
484 |
|
|
for i in range(len(names) - 1, -1, -1): |
485 |
|
|
if len(names[i]) <= 10: |
486 |
|
|
name_map[names[i]] = names[i] |
487 |
|
|
del names[i] |
488 |
|
|
|
489 |
|
|
# dict used as a set of all names already used as DBF column names |
490 |
|
|
used = name_map.copy() |
491 |
|
|
|
492 |
|
|
# Go through all longer names. If the name truncated to 10 |
493 |
|
|
# characters is not used already, we use that. Otherwise we truncate |
494 |
|
|
# it more and append numbers until we get an unused name |
495 |
|
|
for name in names: |
496 |
|
|
truncated = name[:10] |
497 |
|
|
num = 0; numstr = "" |
498 |
|
|
#print "truncated", truncated, num |
499 |
|
|
while truncated in used and len(numstr) < 10: |
500 |
|
|
num += 1 |
501 |
|
|
numstr = str(num) |
502 |
|
|
truncated = name[:10 - len(numstr)] + numstr |
503 |
|
|
#print "truncated", truncated, num |
504 |
|
|
if len(numstr) >= 10: |
505 |
|
|
# This case should never happen in practice as tables with |
506 |
|
|
# 10^10 columns seem very unlikely :) |
507 |
|
|
raise ValueError("Can't find unique dbf column name") |
508 |
|
|
|
509 |
|
|
name_map[name] = truncated |
510 |
|
|
used[truncated] = 1 |
511 |
|
|
|
512 |
|
|
return name_map |
513 |
|
|
|
514 |
jonathan |
1431 |
def table_to_dbf(table, filename, rows = None): |
515 |
|
|
"""Create the dbf file filename from the table. |
516 |
|
|
|
517 |
|
|
If rows is not None (the default) then it must be a list of row |
518 |
|
|
indices to be saved to the file, otherwise all rows are saved. |
519 |
|
|
""" |
520 |
|
|
|
521 |
frank |
1025 |
dbf = dbflib.create(filename) |
522 |
|
|
|
523 |
|
|
dbflib_fieldtypes = {FIELDTYPE_STRING: dbflib.FTString, |
524 |
|
|
FIELDTYPE_INT: dbflib.FTInteger, |
525 |
|
|
FIELDTYPE_DOUBLE: dbflib.FTDouble} |
526 |
|
|
|
527 |
bh |
1371 |
|
528 |
|
|
name_map = _find_dbf_column_names([col.name for col in table.Columns()]) |
529 |
|
|
|
530 |
frank |
1025 |
# Initialise the header. Distinguish between DBFTable and others. |
531 |
|
|
for col in table.Columns(): |
532 |
|
|
width = table.Width(col.name) |
533 |
bh |
1043 |
if col.type == FIELDTYPE_DOUBLE: |
534 |
|
|
prec = getattr(col, "prec", 12) |
535 |
|
|
else: |
536 |
|
|
prec = 0 |
537 |
bh |
1371 |
dbf.add_field(name_map[col.name], dbflib_fieldtypes[col.type], |
538 |
|
|
width, prec) |
539 |
frank |
1025 |
|
540 |
jonathan |
1431 |
if rows is None: |
541 |
|
|
rows = range(table.NumRows()) |
542 |
jonathan |
1389 |
|
543 |
|
|
recNum = 0 |
544 |
jonathan |
1431 |
for i in rows: |
545 |
bh |
1371 |
record = {} |
546 |
|
|
for key, value in table.ReadRowAsDict(i).items(): |
547 |
|
|
record[name_map[key]] = value |
548 |
jonathan |
1389 |
dbf.write_record(recNum, record) |
549 |
|
|
recNum += 1 |
550 |
frank |
1025 |
dbf.close() |
551 |
|
|
|
552 |
jonathan |
1431 |
def table_to_csv(table, filename, rows = None): |
553 |
|
|
"""Export table to csv file. |
554 |
|
|
|
555 |
|
|
If rows is not None (the default) then it must be a list of row |
556 |
|
|
indices to be saved to the file, otherwise all rows are saved. |
557 |
|
|
""" |
558 |
frank |
1025 |
|
559 |
|
|
file = open(filename,"w") |
560 |
|
|
columns = table.Columns() |
561 |
|
|
if columns: |
562 |
|
|
header = "#%s" % columns[0].name |
563 |
|
|
for col in columns[1:]: |
564 |
|
|
header = header + ",%s" % col.name |
565 |
|
|
header = header + "\n" |
566 |
|
|
file.write(header) |
567 |
|
|
|
568 |
jonathan |
1431 |
if rows is None: |
569 |
|
|
rows = range(table.NumRows()) |
570 |
jonathan |
1389 |
|
571 |
jonathan |
1431 |
for i in rows: |
572 |
frank |
1025 |
record = table.ReadRowAsDict(i) |
573 |
|
|
if len(record): |
574 |
|
|
line = "%s" % record[columns[0].name] |
575 |
|
|
for col in columns[1:]: |
576 |
|
|
line = line + ",%s" % record[col.name] |
577 |
|
|
line = line + "\n" |
578 |
|
|
file.write(line) |
579 |
|
|
file.close() |
580 |
|
|
|