/[thuban]/branches/WIP-pyshapelib-bramz/Thuban/Model/transientdb.py
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Revision 1364 - (hide annotations)
Thu Jul 3 13:09:43 2003 UTC (21 years, 8 months ago) by bh
Original Path: trunk/thuban/Thuban/Model/transientdb.py
File MIME type: text/x-python
File size: 20581 byte(s)
* test/test_transientdb.py
(TestTransientTable.test_transient_joined_table_same_column_name):
Update to reflect the new behavior
(TestTransientTable.test_transient_joined_table_with_equal_column_names):
Update to reflect the new behavior
(TestTransientTable.test_transient_joined_table_name_collisions_dont_modify_in_place):
New test case for a bug which modified the column objects in place

* Thuban/Model/transientdb.py (TransientJoinedTable.__init__):
Update doc-string
(TransientJoinedTable.create): Do not modify the column objects of
the input tables in place and copy all columns of the input tables
into the joined table after all.

1 bh 765 # Copyright (C) 2003 by Intevation GmbH
2     # Authors:
3     # Bernhard Herzog <[email protected]>
4     #
5     # This program is free software under the GPL (>=v2)
6     # Read the file COPYING coming with the software for details.
7    
8     """Database for transient data
9    
10     This database is intended for data representations needed during the
11     lifetime of a Thuban session but which is not permanent. Examples of
12     this are for instance a join of two DBF files where the DBF files are
13     the permanent representation of the data and the join only exists in the
14     Thuban session and is reconstructed when the session is opened.
15     """
16    
17     __version__ = "$Revision$"
18     # $Source$
19     # $Id$
20    
21     import os
22     import weakref
23     from sqlite import connect
24    
25 jan 1020 from base import TitledObject
26    
27 bh 765 import table
28    
29     sql_type_map = {
30     table.FIELDTYPE_INT: "INTEGER",
31     table.FIELDTYPE_STRING: "VARCHAR",
32     table.FIELDTYPE_DOUBLE: "FLOAT",
33     }
34    
35     type_converter_map = {
36     table.FIELDTYPE_INT: int,
37     table.FIELDTYPE_STRING: str,
38     table.FIELDTYPE_DOUBLE: float,
39     }
40    
41     class TransientDatabase:
42    
43     def __init__(self, filename):
44     self.filename = filename
45     self.conn = connect(filename)
46     # Counters to produce unique table and column names
47     self.num_tables = 0
48     self.num_cols = 0
49     # Since there's only once process using the SQLite database, we
50     # might be able to get a tad more speed with default_synchronous
51     # OFF. So far I haven't seen any measurable speedup, though.
52     #self.execute("PRAGMA default_synchronous = OFF")
53    
54     def __del__(self):
55     self.close()
56    
57     def close(self):
58 bh 777 if self.conn is not None:
59 bh 765 self.conn.close()
60 bh 777 self.conn = None
61 bh 765
62     def new_table_name(self):
63     self.num_tables += 1
64     return "Table%03d" % self.num_tables
65    
66     def new_column_name(self):
67     self.num_cols += 1
68     return "Col%03d" % self.num_cols
69    
70     def execute(self, *args):
71     """execute the SQL statement in the database and return the result"""
72     cursor = self.conn.cursor()
73     cursor.execute(*args)
74     result = cursor.fetchone()
75     self.conn.commit()
76     return result
77    
78     def cursor(self):
79     return self.conn.cursor()
80    
81    
82     class ColumnReference:
83    
84     def __init__(self, name, type, internal_name):
85     self.name = name
86     self.type = type
87     self.internal_name = internal_name
88    
89    
90 bh 818 class TransientTableBase(table.OldTableInterfaceMixin):
91 bh 765
92     """Base class for tables in the transient database"""
93    
94     def __init__(self, transient_db):
95     """Initialize the table for use with the given transient db"""
96     self.db = transient_db
97     self.tablename = self.db.new_table_name()
98     self.indexed_columns = {}
99     self.read_record_cursor = None
100     self.read_record_last_row = None
101 bh 785 self.read_record_last_result = None
102 bh 765
103     def create(self, columns):
104     self.columns = columns
105     self.name_to_column = {}
106     self.orig_names = []
107     self.internal_to_orig = {}
108     self.orig_to_internal = {}
109 bh 818 self.column_map = {}
110 bh 765
111     # Create the column objects and fill various maps and lists
112 bh 818 for index in range(len(self.columns)):
113     col = self.columns[index]
114 bh 765 self.name_to_column[col.name] = col
115     self.orig_names.append(col.name)
116     self.internal_to_orig[col.internal_name] = col.name
117     self.orig_to_internal[col.name] = col.internal_name
118 bh 818 self.column_map[col.name] = col
119     self.column_map[index] = col
120 bh 765
121     # Build the CREATE TABLE statement and create the table in the
122     # database
123 bh 841 table_types = ["id INTEGER PRIMARY KEY"]
124 bh 765 for col in self.columns:
125     table_types.append("%s %s" % (col.internal_name,
126     sql_type_map[col.type]))
127     table_stmt = "CREATE TABLE %s (\n %s\n);" % (self.tablename,
128     ",\n ".join(table_types))
129     self.db.execute(table_stmt)
130    
131     def transient_table(self):
132     """
133     Return a table whose underlying implementation is in the transient db
134     """
135     return self
136    
137     def ensure_index(self, column):
138     """Ensure that there's an index on the given column"""
139     if not column in self.indexed_columns:
140     internal_name = self.orig_to_internal[column]
141     indexname = "Index_%s_%s" % (self.tablename, internal_name)
142     stmt = "CREATE INDEX %s ON %s (%s);" % (indexname, self.tablename,
143     internal_name)
144     self.db.execute(stmt)
145     self.indexed_columns[column] = 1
146    
147 bh 818 def NumColumns(self):
148 bh 765 return len(self.columns)
149    
150 bh 818 def NumRows(self):
151 bh 765 result = self.db.execute("SELECT count(*) FROM %s;" % self.tablename)
152     return int(result[0])
153    
154 bh 818 def Columns(self):
155     return self.columns
156    
157     def Column(self, col):
158     return self.column_map[col]
159    
160 bh 839 def HasColumn(self, col):
161     """Return whether the table has a column with the given name or index
162     """
163     return self.column_map.has_key(col)
164    
165 bh 818 def ReadRowAsDict(self, index):
166 bh 849 # Implementation Strategy: Executing a completely new select
167     # statement every time this method is called is too slow. The
168     # most important usage is to read the records more or less
169     # sequentially. This happens e.g. when drawing a layer with a
170     # classification where the shapes are drawn in order of the
171     # shape ids. Another pattern is that the same row is requested
172     # several times in a row. This happens in the table view, for
173     # instance.
174    
175     # We can exploit this to make access faster by having one cursor
176     # open all the time and keeping the last row read around in case
177     # the same row is accessed again the next time and if the row
178     # index is larger than the row we have read last we simply fetch
179     # rows from the cursor until we've reached the requested row. If
180     # the requested row index is smaller then we start a new cursor.
181    
182     # FIXME: So far this scheme seems to work well enough. Obvious
183     # improvements would be to start the cursor at exactly the
184     # requested row (should be efficient and easy to do now that the
185     # id is the primary key) and to perhaps to also start a new
186     # cursor if the requested index is much larger than the last row
187     # so that we don't read and discard lots of the rows.
188    
189     # Check whether we have to start a new cursor
190 bh 765 if self.read_record_cursor is None or index <self.read_record_last_row:
191     stmt = ("SELECT %s FROM %s;"
192     % (", ".join([c.internal_name for c in self.columns]),
193     self.tablename))
194     self.read_record_cursor = self.db.cursor()
195     self.read_record_cursor.execute(stmt)
196     self.read_record_last_row = -1
197 bh 785 self.read_record_last_result = None
198    
199     # Now we should have a cursor at a position less than or equal
200     # to the index so the following if statement will always set
201     # result to a suitable value
202     assert index >= self.read_record_last_row
203    
204     if index == self.read_record_last_row:
205 bh 818 result = self.read_record_last_result
206 bh 785 else:
207     for i in range(index - self.read_record_last_row):
208     result = self.read_record_cursor.fetchone()
209     self.read_record_last_result = result
210 bh 765 self.read_record_last_row = index
211 bh 785 return dict(zip(self.orig_names, result))
212 bh 765
213 bh 849 def ReadValue(self, row, col):
214     """Return the value of the specified row and column
215    
216     The col parameter may be the index of the column or its name.
217     """
218     # Depending on the actual access patterns of the table data, it
219     # might be a bit faster in some circumstances to not implement
220     # this via ReadRowAsDict, but this simple implementation should
221     # be fast enough for most purposes.
222     return self.ReadRowAsDict(row)[self.column_map[col].name]
223    
224 bh 818 def ValueRange(self, col):
225     col = self.column_map[col]
226 bh 765 iname = col.internal_name
227     min, max = self.db.execute("SELECT min(%s), max(%s) FROM %s;"
228     % (iname, iname, self.tablename))
229     converter = type_converter_map[col.type]
230 bh 818 return (converter(min), converter(max))
231 bh 765
232 bh 818 def UniqueValues(self, col):
233     iname = self.column_map[col].internal_name
234 bh 765 cursor = self.db.cursor()
235     cursor.execute("SELECT %s FROM %s GROUP BY %s;"
236     % (iname, self.tablename, iname))
237     result = []
238     while 1:
239     row = cursor.fetchone()
240     if row is None:
241     break
242     result.append(row[0])
243     return result
244    
245 frank 1026 def Width(self, col):
246     """Return the maximum width of values in the column
247    
248     The return value is the the maximum length of string representation
249     of the values in the column (represented by index or name)."""
250     max = 0
251    
252     type = self.column_map[col].type
253     iname = self.column_map[col].internal_name
254     cursor = self.db.cursor()
255     cursor.execute("SELECT %s FROM %s;" % (iname, self.tablename))
256     values = [ i[0] for i in cursor.fetchall()]
257     if not values:
258     return None
259    
260     if type == sql_type_map[table.FIELDTYPE_DOUBLE]:
261 bh 1043 format = "%.12f"
262 frank 1026 elif type == sql_type_map[table.FIELDTYPE_INT]:
263     format = "%d"
264     else:
265     format = "%s"
266     for value in values:
267     if value is None: continue
268     l = len(format % value)
269     if l > max:
270     max = l
271    
272     return max
273    
274 bh 841 def SimpleQuery(self, left, comparison, right):
275     """Return the indices of all rows that matching a condition.
276 bh 765
277 bh 841 Parameters:
278     left -- The column object for the left side of the comparison
279    
280     comparison -- The comparison operator as a string. It must be
281     one of '==', '!=', '<', '<=', '>=', '>'
282    
283     right -- The right hand side of the comparison. It must be
284     either a column object or a value, i.e. a string,
285     int or float.
286    
287     The return value is a sorted list of the indices of the rows
288     where the condition is true.
289     """
290     if comparison not in ("==", "!=", "<", "<=", ">=", ">"):
291     raise ValueError("Comparison operator %r not allowed" % comparison)
292    
293     if hasattr(right, "internal_name"):
294     right_template = right.internal_name
295     params = ()
296     else:
297     right_template = "%s"
298     params = (right,)
299    
300     query = "SELECT id FROM %s WHERE %s %s %s ORDER BY id;" \
301     % (self.tablename, left.internal_name, comparison,
302     right_template)
303    
304     cursor = self.db.cursor()
305     cursor.execute(query, params)
306     result = []
307     while 1:
308     row = cursor.fetchone()
309     if row is None:
310     break
311     result.append(row[0])
312     return result
313    
314 bh 984 def Dependencies(self):
315     """Placeholder for a method in a derived class.
316 bh 841
317 bh 984 Return a sequence with the tables and other data objects that
318     self depends on.
319     """
320     raise NotImplementedError
321    
322    
323 jan 1020 class TransientTable(TitledObject, TransientTableBase):
324 bh 765
325     """A Table in a transient DB that starts as the copy of a Thuban Table."""
326    
327     def __init__(self, transient_db, table):
328     """Create a new table in the given transient DB as a copy of table
329    
330     The table argument can be any object implementing the Table
331     interface.
332     """
333     TransientTableBase.__init__(self, transient_db)
334 jan 1020 TitledObject.__init__(self, table.Title())
335 bh 765 self.create(table)
336    
337     def create(self, table):
338     columns = []
339 bh 818 for col in table.Columns():
340     columns.append(ColumnReference(col.name, col.type,
341 bh 765 self.db.new_column_name()))
342     TransientTableBase.create(self, columns)
343    
344     # copy the input table to the transient db
345 bh 841
346     # A key to insert to use for the formatting of the insert
347     # statement. The key must not be equal to any of the column
348     # names so we construct one by building a string of x's that is
349     # longer than any of the column names
350     id_key = max([len(col.name) for col in self.columns]) * "x"
351    
352     insert_template = "INSERT INTO %s (id, %s) VALUES (%%(%s)s, %s);" \
353 bh 765 % (self.tablename,
354     ", ".join([col.internal_name
355     for col in self.columns]),
356 bh 841 id_key,
357 bh 765 ", ".join(["%%(%s)s" % col.name
358     for col in self.columns]))
359     cursor = self.db.cursor()
360 bh 818 for i in range(table.NumRows()):
361 bh 841 row = table.ReadRowAsDict(i)
362     row[id_key] = i
363     cursor.execute(insert_template, row)
364 bh 765 self.db.conn.commit()
365    
366    
367    
368 jan 1020 class TransientJoinedTable(TitledObject, TransientTableBase):
369 bh 765
370     """A Table in the transient DB that contains a join of two tables"""
371    
372     def __init__(self, transient_db, left_table, left_field,
373 frank 1009 right_table, right_field = None, outer_join = False):
374 bh 765 """Create a new table in the transient DB as a join of two tables.
375    
376     Both input tables, left_table and right_table must have a
377     transient_table method that returns a table object for a table
378 frank 1002 in the transient database. The join is performed on the condition
379 bh 765 that the value of the left_field column the the left table is
380     equal to the value of the right_field in the right_table.
381    
382 bh 1364 The joined table contains all columns of the input tables,
383     however, the column names of the right table may be changed
384     slightly to make them unique in the joined table. This is
385     currently done by appending a sufficient number of underscores
386     ('_').
387 bh 765 """
388     TransientTableBase.__init__(self, transient_db)
389 bh 984 self.dependencies = (left_table, right_table)
390 bh 765 self.left_table = left_table.transient_table()
391     self.left_field = left_field
392     self.right_table = right_table.transient_table()
393     if right_field:
394     self.right_field = right_field
395     else:
396     self.right_field = self.left_field
397 frank 1009 self.outer_join = outer_join
398 jan 1020
399     title = "Join of %(left)s and %(right)s" \
400     % {"left": self.left_table.Title(),
401     "right": self.right_table.Title()}
402     TitledObject.__init__(self, title)
403    
404 bh 765 self.create()
405    
406     def create(self):
407     """Internal: Create the table with the joined data"""
408     self.tablename = self.db.new_table_name()
409    
410     self.right_table.ensure_index(self.right_field)
411    
412 bh 1328 # determine the internal column names to join on before
413     # coalescing the column information because if the external
414     # column names are the same they will be mapped to the same
415     # internal name afterwards.
416     internal_left_col = self.left_table.orig_to_internal[self.left_field]
417 bh 1364 internal_right_col =self.right_table.orig_to_internal[self.right_field]
418 bh 1328
419 bh 765 # Coalesce the column information
420     visited = {}
421     columns = []
422 frank 1333 newcolumns = []
423 bh 1364 for table in (self.left_table, self.right_table):
424     for col in table.Columns():
425     colname = col.name
426     # We can't allow multiple columns with the same
427     # original name, so append '_' to this one until
428     # it is unique.
429     # FIXME: There should be a better solution.
430     while colname in visited:
431     colname = colname + '_'
432     columns.append((table.tablename, col))
433     newcol = ColumnReference(colname, col.type,
434     "Col%03d" % (len(newcolumns)+1))
435     newcolumns.append(newcol)
436     visited[colname] = 1
437 frank 1333 TransientTableBase.create(self, newcolumns)
438 bh 765
439     # Copy the joined data to the table.
440 frank 1333 newinternal_names = [col.internal_name for col in self.columns]
441     internal_references = ["%s.%s" % (table, col.internal_name)
442     for table, col in columns]
443 frank 1009 if self.outer_join:
444     join_operator = 'LEFT OUTER JOIN'
445     else:
446     join_operator = 'JOIN'
447 bh 841 stmt = ("INSERT INTO %s (id, %s) SELECT %s.id, %s FROM %s"
448 frank 1333 " %s %s ON %s.%s = %s.%s;"
449 bh 841 % (self.tablename,
450 frank 1333 ", ".join(newinternal_names),
451 bh 841 self.left_table.tablename,
452 frank 1333 ", ".join(internal_references),
453 bh 841 self.left_table.tablename,
454 frank 1009 join_operator,
455 bh 841 self.right_table.tablename,
456 frank 1333 self.left_table.tablename,
457 bh 1328 internal_left_col,
458 frank 1333 self.right_table.tablename,
459 bh 1328 internal_right_col))
460 bh 765 self.db.execute(stmt)
461    
462 bh 984 def Dependencies(self):
463     """Return a tuple with the two tables the join depends on."""
464     return self.dependencies
465 bh 765
466 bh 984
467 jan 1020 class AutoTransientTable(TitledObject, table.OldTableInterfaceMixin):
468 bh 765
469     """Table that copies data to a transient table on demand.
470    
471     The AutoTransientTable takes another table as input and copies data
472     to a table in a TransientDatabase instance on demand.
473     """
474    
475     def __init__(self, transient_db, table):
476 jan 1020 TitledObject.__init__(self, table.Title())
477 bh 765 self.transient_db = transient_db
478     self.table = table
479     self.t_table = None
480    
481 bh 818 def Columns(self):
482     return self.table.Columns()
483 bh 765
484 bh 818 def Column(self, col):
485     return self.table.Column(col)
486 bh 765
487 bh 839 def HasColumn(self, col):
488     """Return whether the table has a column with the given name or index
489     """
490     return self.table.HasColumn(col)
491    
492 bh 818 def NumRows(self):
493     return self.table.NumRows()
494 bh 765
495 bh 818 def NumColumns(self):
496     return self.table.NumColumns()
497 bh 765
498 bh 818 def ReadRowAsDict(self, record):
499 bh 765 """Return the record no. record as a dict mapping field names to values
500     """
501     if self.t_table is not None:
502 bh 839 return self.t_table.ReadRowAsDict(record)
503 bh 765 else:
504 bh 818 return self.table.ReadRowAsDict(record)
505 bh 765
506 bh 849 def ReadValue(self, row, col):
507     """Return the value of the specified row and column
508    
509     The col parameter may be the index of the column or its name.
510     """
511     if self.t_table is not None:
512     return self.t_table.ReadValue(row, col)
513     else:
514     return self.table.ReadValue(row, col)
515    
516 bh 765 def copy_to_transient(self):
517     """Internal: Create a transient table and copy the data into it"""
518     self.t_table = TransientTable(self.transient_db, self)
519    
520     def transient_table(self):
521     """
522     Return a table whose underlying implementation is in the transient db
523     """
524     if self.t_table is None:
525     self.copy_to_transient()
526     return self.t_table
527    
528 bh 818 def ValueRange(self, col):
529 bh 765 if self.t_table is None:
530     self.copy_to_transient()
531 bh 839 return self.t_table.ValueRange(col)
532 bh 765
533 bh 839 def UniqueValues(self, col):
534 bh 765 if self.t_table is None:
535     self.copy_to_transient()
536 bh 839 return self.t_table.UniqueValues(col)
537 bh 844
538     def SimpleQuery(self, left, comparison, right):
539     if self.t_table is None:
540     self.copy_to_transient()
541     # Make sure to use the column object of the transient table. The
542     # left argument is always a column object so we can just ask the
543     # t_table for the right object.
544 jonathan 933 if hasattr(right, "name"):
545     return self.t_table.SimpleQuery(self.t_table.Column(left.name),
546     comparison,
547     self.t_table.Column(right.name))
548     else:
549     return self.t_table.SimpleQuery(self.t_table.Column(left.name),
550     comparison, right)
551 bh 984
552     def Dependencies(self):
553     """Return a tuple containing the original table"""
554     return (self.table,)
555 frank 1026
556 bh 1043 def Width(self, col):
557     return self.table.Width(col)

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