/[thuban]/branches/WIP-pyshapelib-bramz/Thuban/Model/transientdb.py
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Revision 1328 - (show annotations)
Tue Jul 1 12:01:58 2003 UTC (21 years, 8 months ago) by bh
Original Path: trunk/thuban/Thuban/Model/transientdb.py
File MIME type: text/x-python
File size: 20097 byte(s)
* test/test_transientdb.py
(TestTransientTable.test_transient_joined_table_same_column_name):
New. Test whether joining on columns with the same names in both
tables works.

* Thuban/Model/transientdb.py (TransientJoinedTable.create): Make
sure to use the right internal names even when joining on field
with the same names in both tables. Also, detect duplicate names
in the joined table correctly.

1 # Copyright (C) 2003 by Intevation GmbH
2 # Authors:
3 # Bernhard Herzog <[email protected]>
4 #
5 # This program is free software under the GPL (>=v2)
6 # Read the file COPYING coming with the software for details.
7
8 """Database for transient data
9
10 This database is intended for data representations needed during the
11 lifetime of a Thuban session but which is not permanent. Examples of
12 this are for instance a join of two DBF files where the DBF files are
13 the permanent representation of the data and the join only exists in the
14 Thuban session and is reconstructed when the session is opened.
15 """
16
17 __version__ = "$Revision$"
18 # $Source$
19 # $Id$
20
21 import os
22 import weakref
23 from sqlite import connect
24
25 from base import TitledObject
26
27 import table
28
29 sql_type_map = {
30 table.FIELDTYPE_INT: "INTEGER",
31 table.FIELDTYPE_STRING: "VARCHAR",
32 table.FIELDTYPE_DOUBLE: "FLOAT",
33 }
34
35 type_converter_map = {
36 table.FIELDTYPE_INT: int,
37 table.FIELDTYPE_STRING: str,
38 table.FIELDTYPE_DOUBLE: float,
39 }
40
41 class TransientDatabase:
42
43 def __init__(self, filename):
44 self.filename = filename
45 self.conn = connect(filename)
46 # Counters to produce unique table and column names
47 self.num_tables = 0
48 self.num_cols = 0
49 # Since there's only once process using the SQLite database, we
50 # might be able to get a tad more speed with default_synchronous
51 # OFF. So far I haven't seen any measurable speedup, though.
52 #self.execute("PRAGMA default_synchronous = OFF")
53
54 def __del__(self):
55 self.close()
56
57 def close(self):
58 if self.conn is not None:
59 self.conn.close()
60 self.conn = None
61
62 def new_table_name(self):
63 self.num_tables += 1
64 return "Table%03d" % self.num_tables
65
66 def new_column_name(self):
67 self.num_cols += 1
68 return "Col%03d" % self.num_cols
69
70 def execute(self, *args):
71 """execute the SQL statement in the database and return the result"""
72 cursor = self.conn.cursor()
73 cursor.execute(*args)
74 result = cursor.fetchone()
75 self.conn.commit()
76 return result
77
78 def cursor(self):
79 return self.conn.cursor()
80
81
82 class ColumnReference:
83
84 def __init__(self, name, type, internal_name):
85 self.name = name
86 self.type = type
87 self.internal_name = internal_name
88
89
90 class TransientTableBase(table.OldTableInterfaceMixin):
91
92 """Base class for tables in the transient database"""
93
94 def __init__(self, transient_db):
95 """Initialize the table for use with the given transient db"""
96 self.db = transient_db
97 self.tablename = self.db.new_table_name()
98 self.indexed_columns = {}
99 self.read_record_cursor = None
100 self.read_record_last_row = None
101 self.read_record_last_result = None
102
103 def create(self, columns):
104 self.columns = columns
105 self.name_to_column = {}
106 self.orig_names = []
107 self.internal_to_orig = {}
108 self.orig_to_internal = {}
109 self.column_map = {}
110
111 # Create the column objects and fill various maps and lists
112 for index in range(len(self.columns)):
113 col = self.columns[index]
114 self.name_to_column[col.name] = col
115 self.orig_names.append(col.name)
116 self.internal_to_orig[col.internal_name] = col.name
117 self.orig_to_internal[col.name] = col.internal_name
118 self.column_map[col.name] = col
119 self.column_map[index] = col
120
121 # Build the CREATE TABLE statement and create the table in the
122 # database
123 table_types = ["id INTEGER PRIMARY KEY"]
124 for col in self.columns:
125 table_types.append("%s %s" % (col.internal_name,
126 sql_type_map[col.type]))
127 table_stmt = "CREATE TABLE %s (\n %s\n);" % (self.tablename,
128 ",\n ".join(table_types))
129 self.db.execute(table_stmt)
130
131 def transient_table(self):
132 """
133 Return a table whose underlying implementation is in the transient db
134 """
135 return self
136
137 def ensure_index(self, column):
138 """Ensure that there's an index on the given column"""
139 if not column in self.indexed_columns:
140 internal_name = self.orig_to_internal[column]
141 indexname = "Index_%s_%s" % (self.tablename, internal_name)
142 stmt = "CREATE INDEX %s ON %s (%s);" % (indexname, self.tablename,
143 internal_name)
144 self.db.execute(stmt)
145 self.indexed_columns[column] = 1
146
147 def NumColumns(self):
148 return len(self.columns)
149
150 def NumRows(self):
151 result = self.db.execute("SELECT count(*) FROM %s;" % self.tablename)
152 return int(result[0])
153
154 def Columns(self):
155 return self.columns
156
157 def Column(self, col):
158 return self.column_map[col]
159
160 def HasColumn(self, col):
161 """Return whether the table has a column with the given name or index
162 """
163 return self.column_map.has_key(col)
164
165 def ReadRowAsDict(self, index):
166 # Implementation Strategy: Executing a completely new select
167 # statement every time this method is called is too slow. The
168 # most important usage is to read the records more or less
169 # sequentially. This happens e.g. when drawing a layer with a
170 # classification where the shapes are drawn in order of the
171 # shape ids. Another pattern is that the same row is requested
172 # several times in a row. This happens in the table view, for
173 # instance.
174
175 # We can exploit this to make access faster by having one cursor
176 # open all the time and keeping the last row read around in case
177 # the same row is accessed again the next time and if the row
178 # index is larger than the row we have read last we simply fetch
179 # rows from the cursor until we've reached the requested row. If
180 # the requested row index is smaller then we start a new cursor.
181
182 # FIXME: So far this scheme seems to work well enough. Obvious
183 # improvements would be to start the cursor at exactly the
184 # requested row (should be efficient and easy to do now that the
185 # id is the primary key) and to perhaps to also start a new
186 # cursor if the requested index is much larger than the last row
187 # so that we don't read and discard lots of the rows.
188
189 # Check whether we have to start a new cursor
190 if self.read_record_cursor is None or index <self.read_record_last_row:
191 stmt = ("SELECT %s FROM %s;"
192 % (", ".join([c.internal_name for c in self.columns]),
193 self.tablename))
194 self.read_record_cursor = self.db.cursor()
195 self.read_record_cursor.execute(stmt)
196 self.read_record_last_row = -1
197 self.read_record_last_result = None
198
199 # Now we should have a cursor at a position less than or equal
200 # to the index so the following if statement will always set
201 # result to a suitable value
202 assert index >= self.read_record_last_row
203
204 if index == self.read_record_last_row:
205 result = self.read_record_last_result
206 else:
207 for i in range(index - self.read_record_last_row):
208 result = self.read_record_cursor.fetchone()
209 self.read_record_last_result = result
210 self.read_record_last_row = index
211 return dict(zip(self.orig_names, result))
212
213 def ReadValue(self, row, col):
214 """Return the value of the specified row and column
215
216 The col parameter may be the index of the column or its name.
217 """
218 # Depending on the actual access patterns of the table data, it
219 # might be a bit faster in some circumstances to not implement
220 # this via ReadRowAsDict, but this simple implementation should
221 # be fast enough for most purposes.
222 return self.ReadRowAsDict(row)[self.column_map[col].name]
223
224 def ValueRange(self, col):
225 col = self.column_map[col]
226 iname = col.internal_name
227 min, max = self.db.execute("SELECT min(%s), max(%s) FROM %s;"
228 % (iname, iname, self.tablename))
229 converter = type_converter_map[col.type]
230 return (converter(min), converter(max))
231
232 def UniqueValues(self, col):
233 iname = self.column_map[col].internal_name
234 cursor = self.db.cursor()
235 cursor.execute("SELECT %s FROM %s GROUP BY %s;"
236 % (iname, self.tablename, iname))
237 result = []
238 while 1:
239 row = cursor.fetchone()
240 if row is None:
241 break
242 result.append(row[0])
243 return result
244
245 def Width(self, col):
246 """Return the maximum width of values in the column
247
248 The return value is the the maximum length of string representation
249 of the values in the column (represented by index or name)."""
250 max = 0
251
252 type = self.column_map[col].type
253 iname = self.column_map[col].internal_name
254 cursor = self.db.cursor()
255 cursor.execute("SELECT %s FROM %s;" % (iname, self.tablename))
256 values = [ i[0] for i in cursor.fetchall()]
257 if not values:
258 return None
259
260 if type == sql_type_map[table.FIELDTYPE_DOUBLE]:
261 format = "%.12f"
262 elif type == sql_type_map[table.FIELDTYPE_INT]:
263 format = "%d"
264 else:
265 format = "%s"
266 for value in values:
267 if value is None: continue
268 l = len(format % value)
269 if l > max:
270 max = l
271
272 return max
273
274 def SimpleQuery(self, left, comparison, right):
275 """Return the indices of all rows that matching a condition.
276
277 Parameters:
278 left -- The column object for the left side of the comparison
279
280 comparison -- The comparison operator as a string. It must be
281 one of '==', '!=', '<', '<=', '>=', '>'
282
283 right -- The right hand side of the comparison. It must be
284 either a column object or a value, i.e. a string,
285 int or float.
286
287 The return value is a sorted list of the indices of the rows
288 where the condition is true.
289 """
290 if comparison not in ("==", "!=", "<", "<=", ">=", ">"):
291 raise ValueError("Comparison operator %r not allowed" % comparison)
292
293 if hasattr(right, "internal_name"):
294 right_template = right.internal_name
295 params = ()
296 else:
297 right_template = "%s"
298 params = (right,)
299
300 query = "SELECT id FROM %s WHERE %s %s %s ORDER BY id;" \
301 % (self.tablename, left.internal_name, comparison,
302 right_template)
303
304 cursor = self.db.cursor()
305 cursor.execute(query, params)
306 result = []
307 while 1:
308 row = cursor.fetchone()
309 if row is None:
310 break
311 result.append(row[0])
312 return result
313
314 def Dependencies(self):
315 """Placeholder for a method in a derived class.
316
317 Return a sequence with the tables and other data objects that
318 self depends on.
319 """
320 raise NotImplementedError
321
322
323 class TransientTable(TitledObject, TransientTableBase):
324
325 """A Table in a transient DB that starts as the copy of a Thuban Table."""
326
327 def __init__(self, transient_db, table):
328 """Create a new table in the given transient DB as a copy of table
329
330 The table argument can be any object implementing the Table
331 interface.
332 """
333 TransientTableBase.__init__(self, transient_db)
334 TitledObject.__init__(self, table.Title())
335 self.create(table)
336
337 def create(self, table):
338 columns = []
339 for col in table.Columns():
340 columns.append(ColumnReference(col.name, col.type,
341 self.db.new_column_name()))
342 TransientTableBase.create(self, columns)
343
344 # copy the input table to the transient db
345
346 # A key to insert to use for the formatting of the insert
347 # statement. The key must not be equal to any of the column
348 # names so we construct one by building a string of x's that is
349 # longer than any of the column names
350 id_key = max([len(col.name) for col in self.columns]) * "x"
351
352 insert_template = "INSERT INTO %s (id, %s) VALUES (%%(%s)s, %s);" \
353 % (self.tablename,
354 ", ".join([col.internal_name
355 for col in self.columns]),
356 id_key,
357 ", ".join(["%%(%s)s" % col.name
358 for col in self.columns]))
359 cursor = self.db.cursor()
360 for i in range(table.NumRows()):
361 row = table.ReadRowAsDict(i)
362 row[id_key] = i
363 cursor.execute(insert_template, row)
364 self.db.conn.commit()
365
366
367
368 class TransientJoinedTable(TitledObject, TransientTableBase):
369
370 """A Table in the transient DB that contains a join of two tables"""
371
372 def __init__(self, transient_db, left_table, left_field,
373 right_table, right_field = None, outer_join = False):
374 """Create a new table in the transient DB as a join of two tables.
375
376 Both input tables, left_table and right_table must have a
377 transient_table method that returns a table object for a table
378 in the transient database. The join is performed on the condition
379 that the value of the left_field column the the left table is
380 equal to the value of the right_field in the right_table.
381
382 The joined table contains all columns of the input tables with
383 one exception: Any column in the right_table with the same name
384 as one of the columns in the left_table will be omitted. This is
385 somewhat of an implementation detail, but is done so that the
386 column names of the joined table can be the same as the column
387 names of the input tables without having to create prefixes.
388 """
389 TransientTableBase.__init__(self, transient_db)
390 self.dependencies = (left_table, right_table)
391 self.left_table = left_table.transient_table()
392 self.left_field = left_field
393 self.right_table = right_table.transient_table()
394 if right_field:
395 self.right_field = right_field
396 else:
397 self.right_field = self.left_field
398 self.outer_join = outer_join
399
400 title = "Join of %(left)s and %(right)s" \
401 % {"left": self.left_table.Title(),
402 "right": self.right_table.Title()}
403 TitledObject.__init__(self, title)
404
405 self.create()
406
407 def create(self):
408 """Internal: Create the table with the joined data"""
409 self.tablename = self.db.new_table_name()
410
411 self.right_table.ensure_index(self.right_field)
412
413 # determine the internal column names to join on before
414 # coalescing the column information because if the external
415 # column names are the same they will be mapped to the same
416 # internal name afterwards.
417 internal_left_col = self.left_table.orig_to_internal[self.left_field]
418 internal_right_col =self.right_table.orig_to_internal[self.right_field]
419
420 # Coalesce the column information
421 visited = {}
422 columns = []
423 for col in self.left_table.columns + self.right_table.columns:
424 if col.name in visited:
425 # We can't allow multiple columns with the same original
426 # name, so omit this one. FIXME: There should be a
427 # better solution.
428 continue
429 columns.append(col)
430 visited[col.name] = 1
431 TransientTableBase.create(self, columns)
432
433 # Copy the joined data to the table.
434 internal_names = [col.internal_name for col in self.columns]
435 if self.outer_join:
436 join_operator = 'LEFT OUTER JOIN'
437 else:
438 join_operator = 'JOIN'
439 stmt = ("INSERT INTO %s (id, %s) SELECT %s.id, %s FROM %s"
440 " %s %s ON %s = %s;"
441 % (self.tablename,
442 ", ".join(internal_names),
443 self.left_table.tablename,
444 ", ".join(internal_names),
445 self.left_table.tablename,
446 join_operator,
447 self.right_table.tablename,
448 internal_left_col,
449 internal_right_col))
450 self.db.execute(stmt)
451
452 def Dependencies(self):
453 """Return a tuple with the two tables the join depends on."""
454 return self.dependencies
455
456
457 class AutoTransientTable(TitledObject, table.OldTableInterfaceMixin):
458
459 """Table that copies data to a transient table on demand.
460
461 The AutoTransientTable takes another table as input and copies data
462 to a table in a TransientDatabase instance on demand.
463 """
464
465 def __init__(self, transient_db, table):
466 TitledObject.__init__(self, table.Title())
467 self.transient_db = transient_db
468 self.table = table
469 self.t_table = None
470
471 def Columns(self):
472 return self.table.Columns()
473
474 def Column(self, col):
475 return self.table.Column(col)
476
477 def HasColumn(self, col):
478 """Return whether the table has a column with the given name or index
479 """
480 return self.table.HasColumn(col)
481
482 def NumRows(self):
483 return self.table.NumRows()
484
485 def NumColumns(self):
486 return self.table.NumColumns()
487
488 def ReadRowAsDict(self, record):
489 """Return the record no. record as a dict mapping field names to values
490 """
491 if self.t_table is not None:
492 return self.t_table.ReadRowAsDict(record)
493 else:
494 return self.table.ReadRowAsDict(record)
495
496 def ReadValue(self, row, col):
497 """Return the value of the specified row and column
498
499 The col parameter may be the index of the column or its name.
500 """
501 if self.t_table is not None:
502 return self.t_table.ReadValue(row, col)
503 else:
504 return self.table.ReadValue(row, col)
505
506 def copy_to_transient(self):
507 """Internal: Create a transient table and copy the data into it"""
508 self.t_table = TransientTable(self.transient_db, self)
509
510 def transient_table(self):
511 """
512 Return a table whose underlying implementation is in the transient db
513 """
514 if self.t_table is None:
515 self.copy_to_transient()
516 return self.t_table
517
518 def ValueRange(self, col):
519 if self.t_table is None:
520 self.copy_to_transient()
521 return self.t_table.ValueRange(col)
522
523 def UniqueValues(self, col):
524 if self.t_table is None:
525 self.copy_to_transient()
526 return self.t_table.UniqueValues(col)
527
528 def SimpleQuery(self, left, comparison, right):
529 if self.t_table is None:
530 self.copy_to_transient()
531 # Make sure to use the column object of the transient table. The
532 # left argument is always a column object so we can just ask the
533 # t_table for the right object.
534 if hasattr(right, "name"):
535 return self.t_table.SimpleQuery(self.t_table.Column(left.name),
536 comparison,
537 self.t_table.Column(right.name))
538 else:
539 return self.t_table.SimpleQuery(self.t_table.Column(left.name),
540 comparison, right)
541
542 def Dependencies(self):
543 """Return a tuple containing the original table"""
544 return (self.table,)
545
546 def Width(self, col):
547 return self.table.Width(col)

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